Variant report

Variant	rs62196260
Chromosome Location	chr20:16517334-16517335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485558	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11697576	0.81[EUR][1000 genomes]
rs11698735	0.81[EUR][1000 genomes]
rs17675229	0.89[EUR][1000 genomes]
rs17675340	0.89[EUR][1000 genomes]
rs17744425	0.81[EUR][1000 genomes]
rs17744455	0.81[EUR][1000 genomes]
rs6034525	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6034526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044091	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6044093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6044099	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044101	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044105	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044108	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6044167	0.81[EUR][1000 genomes]
rs6044172	0.81[EUR][1000 genomes]
rs6111185	0.89[EUR][1000 genomes]
rs62196283	0.89[EUR][1000 genomes]
rs62196284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62196285	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62196286	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62196289	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62196304	0.89[EUR][1000 genomes]
rs62196305	0.89[EUR][1000 genomes]
rs62196306	0.81[EUR][1000 genomes]
rs62196307	0.89[EUR][1000 genomes]
rs62196308	0.89[EUR][1000 genomes]
rs62196310	0.89[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16472800-16517400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr20:16485800-16521200	Weak transcription	Right Ventricle	heart
3	chr20:16489200-16521000	Weak transcription	Spleen	Spleen
4	chr20:16489400-16517600	Weak transcription	Pancreas	Pancrea
5	chr20:16492400-16517800	Weak transcription	Colon Smooth Muscle	Colon
6	chr20:16492600-16528800	Weak transcription	Primary B cells from cord blood	blood
7	chr20:16493000-16521200	Weak transcription	Liver	Liver
8	chr20:16497600-16521600	Weak transcription	Brain Hippocampus Middle	brain
9	chr20:16506200-16517800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr20:16506400-16517400	Weak transcription	Adipose Nuclei	Adipose
11	chr20:16507400-16527000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr20:16508000-16522000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr20:16508400-16536800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr20:16509000-16517400	Weak transcription	Left Ventricle	heart
15	chr20:16509000-16522000	Weak transcription	Aorta	Aorta
16	chr20:16509200-16553000	Weak transcription	Primary T cells from cord blood	blood
17	chr20:16509400-16517400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr20:16509600-16521600	Weak transcription	Fetal Muscle Leg	muscle
19	chr20:16509800-16517400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr20:16510400-16517400	Weak transcription	Small Intestine	intestine
21	chr20:16511200-16518400	Weak transcription	NHEK	skin
22	chr20:16511400-16518600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr20:16511400-16519600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr20:16511400-16519800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr20:16511600-16517600	Weak transcription	Stomach Mucosa	stomach
26	chr20:16511600-16522400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr20:16511600-16549000	Weak transcription	Colonic Mucosa	Colon
28	chr20:16511800-16517400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr20:16511800-16518000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr20:16512200-16517600	Weak transcription	Ovary	ovary
31	chr20:16512400-16517400	Weak transcription	Esophagus	oesophagus
32	chr20:16513600-16517400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr20:16514000-16517400	Weak transcription	Fetal Intestine Large	intestine
34	chr20:16514000-16517400	Weak transcription	Psoas Muscle	Psoas
35	chr20:16514200-16517400	Weak transcription	Fetal Intestine Small	intestine
36	chr20:16514400-16522000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr20:16516000-16517600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr20:16516600-16520000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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