Variant report

Variant	rs17748864
Chromosome Location	chr3:179649511-179649512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11708154	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11709733	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11718907	0.88[EUR][1000 genomes]
rs1404271	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1599791	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16830940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17691911	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17748709	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302741	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2302742	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28619517	0.89[EUR][1000 genomes]
rs41265425	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4146789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56263652	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56395499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56677569	0.83[EUR][1000 genomes]
rs56836862	0.88[EUR][1000 genomes]
rs57376419	0.85[EUR][1000 genomes]
rs57823511	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59018122	0.89[EUR][1000 genomes]
rs59453720	0.87[EUR][1000 genomes]
rs73058681	0.83[EUR][1000 genomes]
rs73060731	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73060760	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73060761	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7630877	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637613	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7646149	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9290685	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs940523	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9682757	0.87[EUR][1000 genomes]
rs9831383	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9836256	0.80[ASN][1000 genomes]
rs9836757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842394	0.91[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179642400-179651000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:179644200-179652000	Enhancers	Dnd41	blood
3	chr3:179644400-179660000	Weak transcription	Pancreas	Pancrea
4	chr3:179648200-179650600	Weak transcription	Brain Substantia Nigra	brain
5	chr3:179648400-179650600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:179648400-179660000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:179648600-179650800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:179648600-179651600	Weak transcription	Brain Angular Gyrus	brain
9	chr3:179648800-179651000	Weak transcription	Brain Anterior Caudate	brain
10	chr3:179649200-179650200	Weak transcription	Fetal Brain Male	brain
11	chr3:179649200-179650600	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:179649200-179651000	Weak transcription	Brain Inferior Temporal Lobe	brain

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