Variant report

Variant	rs57823511
Chromosome Location	chr3:179624521-179624522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11708154	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11709733	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11718907	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1404271	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1599791	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16830940	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17691911	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17748709	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17748864	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2302741	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302742	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28534744	0.91[ASN][1000 genomes]
rs28619517	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41265425	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146789	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56263652	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56395499	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56677569	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56836862	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57376419	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59018122	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59453720	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73058681	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73060731	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73060760	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73060761	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7630877	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7637613	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646149	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9290685	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs940523	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682757	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9831383	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9836256	0.83[ASN][1000 genomes]
rs9836757	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9842394	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179606000-179626600	Weak transcription	Dnd41	blood
2	chr3:179606200-179628800	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:179620200-179625200	Weak transcription	Pancreas	Pancrea
4	chr3:179622800-179624800	Enhancers	Brain Substantia Nigra	brain
5	chr3:179623000-179625600	Weak transcription	Ovary	ovary
6	chr3:179623400-179624800	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:179624000-179624600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:179624000-179624800	Enhancers	Brain Anterior Caudate	brain
9	chr3:179624200-179624800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr3:179624400-179624600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links