Variant report

Variant	rs28534744
Chromosome Location	chr3:179603065-179603066
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11709733	0.88[ASN][1000 genomes]
rs11718907	0.97[ASN][1000 genomes]
rs1599791	0.97[ASN][1000 genomes]
rs2302741	0.91[ASN][1000 genomes]
rs2302742	0.91[ASN][1000 genomes]
rs28619517	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs41265425	0.91[ASN][1000 genomes]
rs56263652	0.85[ASN][1000 genomes]
rs56836862	0.97[ASN][1000 genomes]
rs57376419	0.93[ASN][1000 genomes]
rs57823511	0.91[ASN][1000 genomes]
rs59018122	0.97[ASN][1000 genomes]
rs59453720	0.97[ASN][1000 genomes]
rs6779911	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7637613	0.91[ASN][1000 genomes]
rs940523	0.91[ASN][1000 genomes]
rs9682757	0.93[ASN][1000 genomes]
rs9836256	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9842394	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179533800-179605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:179564200-179606000	Strong transcription	Dnd41	blood
3	chr3:179595800-179605800	Weak transcription	Pancreas	Pancrea
4	chr3:179598800-179603600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:179600400-179603400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:179600400-179610600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:179600600-179603400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:179601000-179603400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:179601000-179604400	Weak transcription	Brain Substantia Nigra	brain
10	chr3:179601000-179605800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:179601000-179609000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:179601200-179603400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:179601200-179603600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:179601200-179603600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:179601200-179603600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:179601200-179603600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:179601200-179603600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:179601200-179604800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:179601200-179605400	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:179601200-179624200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:179602200-179603400	Weak transcription	GM12878-XiMat	blood
22	chr3:179603000-179606000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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