Variant report

Variant	rs41265425
Chromosome Location	chr3:179605647-179605648
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11708154	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11709733	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11718907	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1404271	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1599791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16830940	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17691911	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17748709	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17748864	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2302741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28534744	0.91[ASN][1000 genomes]
rs28619517	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4146789	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56263652	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56395499	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56677569	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56836862	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57376419	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57823511	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59018122	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59453720	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73058681	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73060731	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73060760	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73060761	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7630877	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7637613	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646149	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9290685	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs940523	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682757	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9831383	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9836256	0.83[ASN][1000 genomes]
rs9836757	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9842394	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179564200-179606000	Strong transcription	Dnd41	blood
2	chr3:179595800-179605800	Weak transcription	Pancreas	Pancrea
3	chr3:179600400-179610600	Weak transcription	Brain Angular Gyrus	brain
4	chr3:179601000-179605800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:179601000-179609000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:179601200-179624200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:179603000-179606000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:179603400-179606000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:179603400-179606000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:179603600-179605800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr3:179603600-179606000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:179603600-179606000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:179604600-179610000	Weak transcription	Brain Substantia Nigra	brain
14	chr3:179604800-179606000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:179605400-179606000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:179605600-179606000	Weak transcription	Brain Hippocampus Middle	brain

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