Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179611140..179614049-chr3:179614091..179617458,3	K562	blood:

Variant related genes	Relation type
ENSG00000244302	Chromatin interaction
ENSG00000114757	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11709733	0.80[ASN][1000 genomes]
rs16830940	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17748709	0.80[ASN][1000 genomes]
rs17748864	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2302741	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2302742	0.83[ASN][1000 genomes]
rs2302743	0.86[GIH][hapmap]
rs2339914	0.86[GIH][hapmap]
rs28534744	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28619517	0.87[ASN][1000 genomes]
rs3774245	1.00[CHB][hapmap]
rs41265425	0.83[ASN][1000 genomes]
rs4146789	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs56395499	0.80[ASN][1000 genomes]
rs57823511	0.83[ASN][1000 genomes]
rs6779911	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7630877	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7637613	0.83[ASN][1000 genomes]
rs940523	1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs9836256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836757	0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179601200-179624200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:179606000-179626600	Weak transcription	Dnd41	blood
3	chr3:179606200-179628800	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:179610800-179622800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:179611000-179623400	Weak transcription	Brain Angular Gyrus	brain

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