Variant report

Variant	rs17757676
Chromosome Location	chr11:86329018-86329019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10792865	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11234719	0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11234731	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12274942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[ASN][1000 genomes]
rs12282010	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs1938921	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1938929	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1938931	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1938932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1938935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[ASN][1000 genomes]
rs2017483	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2212340	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2212341	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4144866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4245417	1.00[ASN][1000 genomes]
rs4245418	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs4245419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs4245420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs4245421	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs4245422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs4245423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs4245424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs4319536	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4439535	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4592448	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4943948	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4943949	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4944602	1.00[ASN][1000 genomes]
rs4944603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs4944607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4944609	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4944611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4944612	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4944618	0.85[ASN][1000 genomes]
rs496167	0.90[ASN][1000 genomes]
rs538058	0.82[CHB][hapmap]
rs550168	0.81[ASN][1000 genomes]
rs647782	0.87[ASN][1000 genomes]
rs656307	0.90[ASN][1000 genomes]
rs6592301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs6592302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs661954	0.81[CHB][hapmap]
rs663543	0.90[ASN][1000 genomes]
rs679220	0.82[CHB][hapmap]
rs7105863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7106865	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7115580	0.84[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7115594	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7115834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7120444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7123010	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7123044	0.98[ASN][1000 genomes]
rs7937853	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7941337	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7941446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7948981	0.98[ASN][1000 genomes]
rs7951868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs9787905	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs999472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86320000-86330400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:86321800-86343200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:86322000-86334200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:86322000-86334200	Weak transcription	Left Ventricle	heart
5	chr11:86325000-86333000	Weak transcription	Stomach Mucosa	stomach
6	chr11:86326000-86331400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:86327600-86329200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:86327600-86329800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:86327800-86329400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:86328200-86329200	Enhancers	Ovary	ovary
11	chr11:86328200-86329200	Enhancers	Osteobl	bone
12	chr11:86328400-86329200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:86328400-86329400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:86328600-86330600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:86329000-86329200	Enhancers	Rectal Smooth Muscle	rectum
16	chr11:86329000-86329200	Enhancers	Right Atrium	heart
17	chr11:86329000-86329200	Enhancers	Skeletal Muscle Male	skeletal muscle

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