Variant report

Variant	rs17761197
Chromosome Location	chr9:22072730-22072731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22071994..22076005-chr9:22076573..22081529,4	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1333035	0.92[CHB][hapmap]
rs17761319	0.87[JPT][hapmap]
rs17761446	0.83[GIH][hapmap];0.87[JPT][hapmap];0.83[MKK][hapmap]
rs17834131	0.83[ASN][1000 genomes]
rs17834457	0.87[JPT][hapmap]
rs2285327	0.92[CHB][hapmap]
rs2811712	0.86[CHB][hapmap]
rs3218002	0.86[CHB][hapmap]
rs3218005	0.86[CHB][hapmap]
rs3218010	0.85[CHB][hapmap]
rs3808845	0.92[CHB][hapmap]
rs4144664	0.92[ASN][1000 genomes]
rs55766371	1.00[AFR][1000 genomes]
rs57076710	1.00[ASN][1000 genomes]
rs58909905	1.00[AFR][1000 genomes]
rs59616750	1.00[AFR][1000 genomes]
rs73650038	1.00[AFR][1000 genomes]
rs73650040	1.00[AFR][1000 genomes]
rs73650041	0.86[AFR][1000 genomes]
rs73650044	1.00[AFR][1000 genomes]
rs73650045	1.00[AFR][1000 genomes]
rs73650046	1.00[AFR][1000 genomes]
rs73650049	1.00[AFR][1000 genomes]
rs73650051	0.85[AFR][1000 genomes]
rs73650060	0.85[AFR][1000 genomes]
rs73650062	0.85[AFR][1000 genomes]
rs73652846	0.83[ASN][1000 genomes]
rs7855162	1.00[ASN][1000 genomes]
rs974336	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1018514	chr9:21944275-22075326	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22053800-22079800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:22055600-22079800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:22067400-22073400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr9:22067600-22073400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:22071200-22078800	Weak transcription	Dnd41	blood
6	chr9:22072000-22076200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:22072000-22076200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:22072000-22076200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr9:22072000-22076400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:22072400-22073200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:22072400-22074000	Enhancers	Primary T cells from cord blood	blood
12	chr9:22072400-22075800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr9:22072600-22073000	Enhancers	Adipose Nuclei	Adipose
14	chr9:22072600-22076400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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