Variant report

Variant	rs4144664
Chromosome Location	chr9:22065656-22065657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17761197	0.92[ASN][1000 genomes]
rs17834131	0.88[ASN][1000 genomes]
rs57076710	0.92[ASN][1000 genomes]
rs73652846	0.88[ASN][1000 genomes]
rs7855162	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1018514	chr9:21944275-22075326	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv892747	chr9:21984661-22068646	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22053800-22069000	Weak transcription	Hela-S3	cervix
2	chr9:22053800-22079800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:22055600-22079800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:22060000-22066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:22063600-22066600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:22063600-22066800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr9:22063600-22067000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr9:22063800-22066200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:22064000-22066600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr9:22064000-22066600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr9:22064000-22066600	Strong transcription	Dnd41	blood
12	chr9:22064200-22066000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr9:22064200-22066600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:22064400-22065800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr9:22064400-22066000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr9:22064400-22066400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:22064600-22066000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:22065000-22066000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr9:22065200-22066200	Enhancers	NHEK	skin
20	chr9:22065400-22066000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr9:22065400-22066000	Enhancers	HMEC	breast
22	chr9:22065600-22065800	Enhancers	Primary T cells from cord blood	blood

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