Variant report

Variant	rs57076710
Chromosome Location	chr9:22075459-22075460
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1547704	1.00[EUR][1000 genomes]
rs16905635	1.00[EUR][1000 genomes]
rs16923583	1.00[EUR][1000 genomes]
rs17761197	1.00[ASN][1000 genomes]
rs17834131	0.83[ASN][1000 genomes]
rs4144664	0.92[ASN][1000 genomes]
rs61374441	1.00[EUR][1000 genomes]
rs6475605	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73448354	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73448363	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73652846	0.83[ASN][1000 genomes]
rs7855162	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869527	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22053800-22079800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:22055600-22079800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:22071200-22078800	Weak transcription	Dnd41	blood
4	chr9:22072000-22076200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:22072000-22076200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:22072000-22076200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:22072000-22076400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:22072400-22075800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr9:22072600-22076400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr9:22073200-22076000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:22073400-22076200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr9:22073400-22076400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr9:22073600-22084600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:22073800-22078200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr9:22074000-22077000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr9:22074200-22076000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr9:22075400-22076400	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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