Variant report

Variant	rs17834131
Chromosome Location	chr9:22046168-22046169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTAP-1	chr9:22045457-22046899	NONHSAT130430

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1333035	0.86[ASN][1000 genomes]
rs17761197	0.83[ASN][1000 genomes]
rs2285327	0.82[ASN][1000 genomes]
rs3218010	0.83[ASN][1000 genomes]
rs3808845	0.83[ASN][1000 genomes]
rs3808846	0.83[ASN][1000 genomes]
rs4144664	0.88[ASN][1000 genomes]
rs57076710	0.83[ASN][1000 genomes]
rs7039304	0.84[ASN][1000 genomes]
rs73652846	1.00[ASN][1000 genomes]
rs7855162	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1018514	chr9:21944275-22075326	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv892747	chr9:21984661-22068646	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22041000-22046400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:22042000-22048000	Weak transcription	Adipose Nuclei	Adipose
3	chr9:22042200-22046600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:22042400-22049200	Weak transcription	Hela-S3	cervix
5	chr9:22042600-22049200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:22042600-22052600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:22042800-22046200	Weak transcription	Fetal Intestine Large	intestine
8	chr9:22042800-22049400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:22042800-22052600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:22044000-22046200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:22044600-22049200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:22045000-22049200	Weak transcription	NHDF-Ad	bronchial
13	chr9:22045200-22049200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:22045200-22049200	Weak transcription	Osteobl	bone
15	chr9:22045200-22049600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:22045400-22046200	Enhancers	Primary T cells from cord blood	blood
17	chr9:22045400-22047200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:22045400-22047200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr9:22045400-22047200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:22045600-22046400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:22045600-22046400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr9:22045600-22046600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr9:22045600-22047200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr9:22045600-22049400	Weak transcription	HMEC	breast
25	chr9:22045600-22050200	Weak transcription	NHEK	skin
26	chr9:22045600-22050400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:22045600-22050400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:22045600-22051800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:22045800-22046600	Weak transcription	Dnd41	blood
30	chr9:22045800-22049200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:22045800-22050400	Weak transcription	NH-A	brain
32	chr9:22046000-22046400	Weak transcription	HSMM	muscle
33	chr9:22046000-22046600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr9:22046000-22047000	Enhancers	Fetal Intestine Small	intestine
35	chr9:22046000-22049400	Weak transcription	HUVEC	blood vessel

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