Variant report

Variant	rs1779229
Chromosome Location	chr10:18529419-18529420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1757199	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1757200	0.81[JPT][hapmap]
rs1757222	0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1892008	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2255266	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1779229	C10orf113	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18515800-18532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:18523000-18549400	Weak transcription	Pancreas	Pancrea
3	chr10:18523200-18529600	Weak transcription	Esophagus	oesophagus
4	chr10:18523200-18529600	Weak transcription	Left Ventricle	heart
5	chr10:18523200-18536000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:18526000-18532200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:18526200-18536000	Weak transcription	Right Atrium	heart
8	chr10:18527000-18548800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:18527400-18530000	Enhancers	Fetal Heart	heart
10	chr10:18528600-18530000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:18528800-18530000	Enhancers	Fetal Lung	lung
12	chr10:18529000-18529600	Active TSS	Ovary	ovary
13	chr10:18529000-18530200	Enhancers	Osteobl	bone
14	chr10:18529200-18529600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:18529200-18529600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:18529200-18529600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:18529200-18529600	Active TSS	Aorta	Aorta
18	chr10:18529200-18529600	Active TSS	NHLF	lung
19	chr10:18529200-18529800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr10:18529200-18530400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr10:18529400-18529600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:18529400-18530000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:18529400-18530000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr10:18529400-18530000	Enhancers	Placenta	Placenta

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