Variant report

Variant	rs1757222
Chromosome Location	chr10:18535012-18535013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1277744	0.95[CHB][hapmap];0.82[TSI][hapmap]
rs1277753	0.95[CHB][hapmap]
rs1613804	0.81[CHB][hapmap]
rs1757199	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1757200	0.89[CEU][hapmap];0.86[CHB][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1757224	0.81[CHB][hapmap]
rs1779229	0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1892008	0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2255266	0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2489199	0.95[CHB][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18523000-18549400	Weak transcription	Pancreas	Pancrea
2	chr10:18523200-18536000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:18526200-18536000	Weak transcription	Right Atrium	heart
4	chr10:18527000-18548800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18530000-18545200	Weak transcription	Fetal Lung	lung
6	chr10:18530200-18535800	Weak transcription	Left Ventricle	heart
7	chr10:18530200-18543600	Weak transcription	Ovary	ovary
8	chr10:18533000-18535800	Weak transcription	Fetal Heart	heart
9	chr10:18533000-18540800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:18534200-18536800	Weak transcription	Fetal Intestine Small	intestine
11	chr10:18534600-18535200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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