Variant report

Variant	rs1277753
Chromosome Location	chr10:18522975-18522976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:18505438..18506646-chr10:18522365..18523085,3	MCF-7	breast:
2	chr10:18505821..18506646-chr10:18522405..18523085,2	MCF-7	breast:
3	chr10:17649518..17650168-chr10:18522404..18523207,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1277744	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277751	0.90[CEU][hapmap]
rs1277752	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs1613804	0.89[CEU][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1628528	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1631891	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1631911	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1757199	0.82[CHB][hapmap]
rs1757222	0.95[CHB][hapmap]
rs1757224	0.89[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1779212	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779213	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779214	0.90[EUR][1000 genomes]
rs2250999	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2255266	0.86[CHB][hapmap]
rs2482109	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2482111	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489199	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2489204	0.88[EUR][1000 genomes]
rs7893583	1.00[YRI][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18514400-18524400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:18514400-18525600	Weak transcription	Fetal Lung	lung
3	chr10:18514400-18526600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:18515800-18532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:18516800-18524800	Weak transcription	Fetal Stomach	stomach
6	chr10:18520800-18525600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:18521800-18523400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:18522000-18523600	Enhancers	Ovary	ovary
9	chr10:18522200-18523600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:18522400-18523000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:18522400-18523200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:18522400-18523200	Enhancers	Fetal Heart	heart
13	chr10:18522400-18523600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:18522600-18523000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:18522600-18523000	Enhancers	Pancreas	Pancrea
16	chr10:18522600-18523200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr10:18522600-18523200	Enhancers	Colon Smooth Muscle	Colon
18	chr10:18522600-18523200	Enhancers	Left Ventricle	heart
19	chr10:18522600-18523400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:18522600-18523400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:18522600-18523400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr10:18522800-18523000	Enhancers	Brain Cingulate Gyrus	brain
23	chr10:18522800-18523200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr10:18522800-18523200	Bivalent Enhancer	Liver	Liver
25	chr10:18522800-18523200	Enhancers	Esophagus	oesophagus

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