Variant report

Variant	rs1779213
Chromosome Location	chr10:18513698-18513699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1277744	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1277752	0.90[EUR][1000 genomes]
rs1277753	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1613804	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1628528	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1631891	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1631911	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1757224	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1779212	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779214	0.94[EUR][1000 genomes]
rs2250999	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2482109	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2482111	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489199	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2489204	0.92[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18511200-18520400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:18511400-18516200	Weak transcription	Fetal Heart	heart
3	chr10:18512400-18518400	Weak transcription	NHLF	lung
4	chr10:18513000-18513800	Weak transcription	Fetal Lung	lung
5	chr10:18513000-18514600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18513400-18514000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:18513400-18514000	Enhancers	Colon Smooth Muscle	Colon
8	chr10:18513400-18514000	Enhancers	Fetal Stomach	stomach
9	chr10:18513400-18514400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:18513400-18514400	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:18513600-18513800	Enhancers	Right Ventricle	heart
12	chr10:18513600-18514000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr10:18513600-18514000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:18513600-18514000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:18513600-18514000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:18513600-18514000	Enhancers	Pancreas	Pancrea
17	chr10:18513600-18514400	Enhancers	Stomach Smooth Muscle	stomach
18	chr10:18513600-18515400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:18513600-18515400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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