Variant report

Variant	rs1277744
Chromosome Location	chr10:18519612-18519613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1277752	0.89[EUR][1000 genomes]
rs1277753	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1613804	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1628528	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1631891	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1631911	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1757199	0.82[CHB][hapmap]
rs1757200	0.80[GIH][hapmap];0.88[TSI][hapmap]
rs1757222	0.95[CHB][hapmap];0.82[TSI][hapmap]
rs1757224	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1779212	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779213	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1779214	0.86[EUR][1000 genomes]
rs1779246	0.81[TSI][hapmap]
rs2250999	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2255266	0.80[CHB][hapmap]
rs2482109	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2482111	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2489204	0.84[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18511200-18520400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:18514000-18522400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:18514000-18522800	Weak transcription	Esophagus	oesophagus
4	chr10:18514400-18524400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18514400-18525600	Weak transcription	Fetal Lung	lung
6	chr10:18514400-18526600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:18515400-18522000	Weak transcription	Ovary	ovary
8	chr10:18515800-18532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:18516800-18524800	Weak transcription	Fetal Stomach	stomach
10	chr10:18517600-18520000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:18517800-18519800	Enhancers	HSMMtube	muscle
12	chr10:18518000-18521000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:18518000-18521000	Enhancers	Osteobl	bone
14	chr10:18518200-18520000	Enhancers	NH-A	brain
15	chr10:18518200-18520800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:18518200-18520800	Enhancers	NHDF-Ad	bronchial
17	chr10:18518400-18520800	Enhancers	NHLF	lung
18	chr10:18519200-18521000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:18519400-18521800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:18519400-18522400	Weak transcription	Fetal Heart	heart
21	chr10:18519600-18520000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:18519600-18522600	Weak transcription	Colon Smooth Muscle	Colon

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