Variant report

Variant	rs2489199
Chromosome Location	chr10:18525290-18525291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11014209	1.00[YRI][hapmap]
rs1277744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1277752	0.84[EUR][1000 genomes]
rs1277753	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1613804	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1628528	0.90[ASN][1000 genomes]
rs1631891	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1631911	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1757199	0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1757200	0.80[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs1757222	0.95[CHB][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs1757224	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1779212	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1779213	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2250999	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2255266	0.80[CHB][hapmap]
rs2482109	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2482111	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18514400-18525600	Weak transcription	Fetal Lung	lung
2	chr10:18514400-18526600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:18515800-18532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:18520800-18525600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:18523000-18549400	Weak transcription	Pancreas	Pancrea
6	chr10:18523200-18525600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:18523200-18529600	Weak transcription	Esophagus	oesophagus
8	chr10:18523200-18529600	Weak transcription	Left Ventricle	heart
9	chr10:18523200-18536000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:18523400-18525600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:18523400-18529200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:18523600-18525400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:18523600-18525600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:18523600-18525600	Weak transcription	Ovary	ovary
15	chr10:18524400-18525600	Enhancers	Stomach Smooth Muscle	stomach
16	chr10:18524400-18527200	Enhancers	Colon Smooth Muscle	Colon
17	chr10:18524600-18526200	Enhancers	Fetal Heart	heart
18	chr10:18524800-18525600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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