Variant report

Variant	rs17815753
Chromosome Location	chr20:22450779-22450780
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22433147..22434679-chr20:22450224..22451820,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1337922	0.83[EUR][1000 genomes]
rs17753624	0.83[EUR][1000 genomes]
rs17815747	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2404164	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4501019	0.96[EUR][1000 genomes]
rs4533554	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56838056	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57564765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58743318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60555721	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61665161	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7267567	0.96[EUR][1000 genomes]
rs7269344	0.83[EUR][1000 genomes]
rs73296667	0.96[EUR][1000 genomes]
rs73296682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73298912	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73298913	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73298915	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8121629	0.96[EUR][1000 genomes]
rs8121931	0.81[EUR][1000 genomes]
rs8121938	0.83[EUR][1000 genomes]
rs8122127	0.83[EUR][1000 genomes]
rs8123670	0.83[EUR][1000 genomes]
rs945980	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs950519	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22446400-22451600	Weak transcription	Gastric	stomach
2	chr20:22447000-22450800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr20:22448200-22452000	Weak transcription	Pancreas	Pancrea
4	chr20:22448200-22452000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr20:22448400-22451400	Enhancers	HepG2	liver
6	chr20:22449400-22450800	Enhancers	A549	lung
7	chr20:22450000-22452200	Weak transcription	K562	blood
8	chr20:22450400-22451200	Weak transcription	Stomach Mucosa	stomach
9	chr20:22450400-22452400	Enhancers	Liver	Liver

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