Variant report

Variant	rs58743318
Chromosome Location	chr20:22449045-22449046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1337922	0.85[EUR][1000 genomes]
rs17753624	0.85[EUR][1000 genomes]
rs17815747	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17815753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2404164	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4501019	0.98[EUR][1000 genomes]
rs4533554	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56838056	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57564765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60555721	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61665161	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7267567	0.98[EUR][1000 genomes]
rs7269344	0.85[EUR][1000 genomes]
rs73296667	0.98[EUR][1000 genomes]
rs73296682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73298912	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73298913	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73298915	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8121629	0.98[EUR][1000 genomes]
rs8121931	0.83[EUR][1000 genomes]
rs8121938	0.85[EUR][1000 genomes]
rs8122043	0.81[EUR][1000 genomes]
rs8122127	0.85[EUR][1000 genomes]
rs8123670	0.85[EUR][1000 genomes]
rs945980	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs950519	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22446400-22451600	Weak transcription	Gastric	stomach
2	chr20:22447000-22450800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr20:22447400-22449600	Weak transcription	K562	blood
4	chr20:22448000-22449400	Weak transcription	A549	lung
5	chr20:22448200-22450400	Weak transcription	Liver	Liver
6	chr20:22448200-22452000	Weak transcription	Pancreas	Pancrea
7	chr20:22448200-22452000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr20:22448400-22449400	Weak transcription	Stomach Mucosa	stomach
9	chr20:22448400-22451400	Enhancers	HepG2	liver

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