Variant report

Variant	rs945980
Chromosome Location	chr20:22453741-22453742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22445335..22448023-chr20:22452182..22454681,2	K562	blood:
2	chr20:22453263..22454880-chr20:22456523..22459115,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11087380	0.81[EUR][1000 genomes]
rs11906432	0.83[EUR][1000 genomes]
rs11907482	0.81[EUR][1000 genomes]
rs12624718	0.86[EUR][1000 genomes]
rs12624722	0.83[EUR][1000 genomes]
rs12624953	0.83[EUR][1000 genomes]
rs1337922	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1415813	0.83[EUR][1000 genomes]
rs16984007	0.83[EUR][1000 genomes]
rs16984013	0.82[AMR][1000 genomes]
rs17753624	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17753672	0.83[EUR][1000 genomes]
rs17815747	0.87[EUR][1000 genomes]
rs17815753	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2404164	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4501019	0.85[EUR][1000 genomes]
rs4533554	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56838056	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57564765	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58743318	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048124	0.82[AMR][1000 genomes]
rs6048129	0.82[AMR][1000 genomes]
rs6048131	0.82[AMR][1000 genomes]
rs6048133	0.82[AMR][1000 genomes]
rs60555721	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61425731	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61665161	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7267567	0.85[EUR][1000 genomes]
rs7269344	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73296667	0.85[EUR][1000 genomes]
rs73296682	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73298912	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73298913	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73298915	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73298930	0.83[EUR][1000 genomes]
rs73900501	0.82[AMR][1000 genomes]
rs8116145	0.83[EUR][1000 genomes]
rs8116146	0.83[EUR][1000 genomes]
rs8117208	0.82[EUR][1000 genomes]
rs8121629	0.85[EUR][1000 genomes]
rs8121889	0.83[EUR][1000 genomes]
rs8121931	0.91[EUR][1000 genomes]
rs8121938	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs8122043	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8122127	0.93[EUR][1000 genomes]
rs8123670	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs950519	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22452800-22454200	Weak transcription	Stomach Mucosa	stomach
2	chr20:22452800-22464000	Weak transcription	Gastric	stomach
3	chr20:22453200-22454400	Weak transcription	A549	lung
4	chr20:22453200-22454800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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