Variant report

Variant	rs1415813
Chromosome Location	chr20:22470776-22470777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22470520..22472530-chr20:22479077..22481947,2	K562	blood:
2	chr20:22470730..22471365-chr20:22664471..22665243,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11087380	0.92[EUR][1000 genomes]
rs11906432	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11907482	0.92[EUR][1000 genomes]
rs12624718	0.97[EUR][1000 genomes]
rs12624722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12624953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1337922	0.91[EUR][1000 genomes]
rs1415814	0.90[EUR][1000 genomes]
rs16984007	0.85[EUR][1000 genomes]
rs16984013	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17753624	0.91[EUR][1000 genomes]
rs17753672	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17753702	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17815823	0.98[ASN][1000 genomes]
rs2404164	0.91[EUR][1000 genomes]
rs4501019	0.89[AMR][1000 genomes]
rs4533554	0.82[EUR][1000 genomes]
rs56838056	0.91[EUR][1000 genomes]
rs6048124	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048129	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048131	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048132	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048133	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60555721	0.91[EUR][1000 genomes]
rs61425731	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61665161	0.91[EUR][1000 genomes]
rs66530603	0.90[EUR][1000 genomes]
rs7267567	0.89[AMR][1000 genomes]
rs7269344	0.91[EUR][1000 genomes]
rs73296667	0.80[AMR][1000 genomes]
rs73298912	0.91[EUR][1000 genomes]
rs73298913	0.91[EUR][1000 genomes]
rs73298915	0.91[EUR][1000 genomes]
rs73298930	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73900501	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8116145	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8116146	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8117208	0.93[EUR][1000 genomes]
rs8121629	0.89[AMR][1000 genomes]
rs8121889	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8121931	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8121938	0.91[EUR][1000 genomes]
rs8122043	0.86[EUR][1000 genomes]
rs8122127	0.91[EUR][1000 genomes]
rs8123670	0.91[EUR][1000 genomes]
rs945980	0.83[EUR][1000 genomes]
rs950519	0.91[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22469800-22475400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22470000-22471000	Enhancers	Liver	Liver
3	chr20:22470000-22471000	Enhancers	Fetal Intestine Large	intestine
4	chr20:22470000-22472200	Enhancers	Fetal Intestine Small	intestine
5	chr20:22470200-22470800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:22470200-22472200	Flanking Active TSS	HepG2	liver
7	chr20:22470400-22470800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
8	chr20:22470400-22471000	Weak transcription	Pancreas	Pancrea
9	chr20:22470400-22472000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr20:22470400-22472200	Flanking Active TSS	A549	lung
11	chr20:22470600-22471000	Active TSS	Duodenum Mucosa	Duodenum
12	chr20:22470600-22471000	Enhancers	Fetal Lung	lung
13	chr20:22470600-22471000	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr20:22470600-22471200	Bivalent Enhancer	Fetal Brain Female	brain
15	chr20:22470600-22471200	Flanking Active TSS	Stomach Mucosa	stomach
16	chr20:22470600-22472000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr20:22470600-22472200	Enhancers	Fetal Kidney	kidney
18	chr20:22470600-22472200	Active TSS	Pancreatic Islets	Pancreatic Islet

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