Variant report

Variant	rs61425731
Chromosome Location	chr20:22472544-22472545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11087380	1.00[EUR][1000 genomes]
rs11906432	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11907482	1.00[EUR][1000 genomes]
rs12624718	0.95[EUR][1000 genomes]
rs12624722	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12624953	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1337922	0.88[EUR][1000 genomes]
rs1415813	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1415814	0.97[EUR][1000 genomes]
rs16984013	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17753624	0.88[EUR][1000 genomes]
rs17753672	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17753702	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17815823	0.94[ASN][1000 genomes]
rs2404164	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4533554	0.87[AMR][1000 genomes]
rs56838056	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6048124	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048129	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048131	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048132	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048133	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60555721	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61665161	0.88[EUR][1000 genomes]
rs66530603	0.97[EUR][1000 genomes]
rs7269344	0.88[EUR][1000 genomes]
rs73298912	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73298913	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73298915	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73298930	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73900501	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8116145	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8116146	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8117208	0.90[EUR][1000 genomes]
rs8121889	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8121931	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8121938	0.88[EUR][1000 genomes]
rs8122043	0.84[EUR][1000 genomes]
rs8122127	0.88[EUR][1000 genomes]
rs8123670	0.88[EUR][1000 genomes]
rs945980	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs950519	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22469800-22475400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22471200-22473600	Enhancers	Liver	Liver
3	chr20:22471200-22473600	Enhancers	Stomach Mucosa	stomach
4	chr20:22471400-22475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr20:22471800-22475600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:22472000-22473200	Weak transcription	Pancreas	Pancrea
7	chr20:22472000-22475400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr20:22472000-22475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr20:22472200-22472600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr20:22472200-22473400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:22472200-22473800	Enhancers	A549	lung
12	chr20:22472200-22474000	Enhancers	HepG2	liver
13	chr20:22472200-22480000	Weak transcription	Fetal Intestine Large	intestine

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