Variant report

Variant	rs66530603
Chromosome Location	chr20:22475003-22475004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11087380	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11906432	0.90[EUR][1000 genomes]
rs11907482	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12624718	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12624722	0.90[EUR][1000 genomes]
rs12624953	0.90[EUR][1000 genomes]
rs1337922	0.86[EUR][1000 genomes]
rs1415813	0.90[EUR][1000 genomes]
rs1415814	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16984013	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17753624	0.86[EUR][1000 genomes]
rs17753672	0.90[EUR][1000 genomes]
rs17753702	0.97[EUR][1000 genomes]
rs2404164	0.86[EUR][1000 genomes]
rs56838056	0.86[EUR][1000 genomes]
rs6048124	0.95[EUR][1000 genomes]
rs6048129	1.00[EUR][1000 genomes]
rs6048131	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6048132	0.97[EUR][1000 genomes]
rs6048133	1.00[EUR][1000 genomes]
rs60555721	0.86[EUR][1000 genomes]
rs61425731	0.97[EUR][1000 genomes]
rs61665161	0.86[EUR][1000 genomes]
rs7269344	0.86[EUR][1000 genomes]
rs73298912	0.86[EUR][1000 genomes]
rs73298913	0.86[EUR][1000 genomes]
rs73298915	0.86[EUR][1000 genomes]
rs73298930	0.90[EUR][1000 genomes]
rs73900501	1.00[EUR][1000 genomes]
rs8116145	0.90[EUR][1000 genomes]
rs8116146	0.90[EUR][1000 genomes]
rs8117208	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8121889	0.90[EUR][1000 genomes]
rs8121931	0.83[EUR][1000 genomes]
rs8121938	0.86[EUR][1000 genomes]
rs8122043	0.82[EUR][1000 genomes]
rs8122127	0.86[EUR][1000 genomes]
rs8123670	0.86[EUR][1000 genomes]
rs950519	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22469800-22475400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22471400-22475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr20:22471800-22475600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:22472000-22475400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:22472000-22475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr20:22472200-22480000	Weak transcription	Fetal Intestine Large	intestine
7	chr20:22473400-22475400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:22473600-22483400	Weak transcription	Pancreas	Pancrea
9	chr20:22474000-22475200	Weak transcription	HepG2	liver
10	chr20:22475000-22479800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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