Variant report

Variant	rs17753624
Chromosome Location	chr20:22454572-22454573
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22445335..22448023-chr20:22452182..22454681,2	K562	blood:
2	chr20:22453263..22454880-chr20:22456523..22459115,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11087380	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11906432	0.91[EUR][1000 genomes]
rs11907482	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12624718	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12624722	0.91[EUR][1000 genomes]
rs12624953	0.91[EUR][1000 genomes]
rs1337922	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1415813	0.91[EUR][1000 genomes]
rs1415814	0.86[EUR][1000 genomes]
rs16984007	0.91[EUR][1000 genomes]
rs16984013	0.86[EUR][1000 genomes]
rs17753672	0.91[EUR][1000 genomes]
rs17753702	0.84[EUR][1000 genomes]
rs17815747	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17815753	0.83[EUR][1000 genomes]
rs2404164	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4501019	0.83[EUR][1000 genomes]
rs4533554	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs56838056	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57564765	0.85[EUR][1000 genomes]
rs58743318	0.85[EUR][1000 genomes]
rs6048124	0.82[EUR][1000 genomes]
rs6048129	0.86[EUR][1000 genomes]
rs6048131	0.86[EUR][1000 genomes]
rs6048132	0.84[EUR][1000 genomes]
rs6048133	0.86[EUR][1000 genomes]
rs60555721	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61425731	0.88[EUR][1000 genomes]
rs61665161	1.00[EUR][1000 genomes]
rs66530603	0.86[EUR][1000 genomes]
rs7267567	0.83[EUR][1000 genomes]
rs7269344	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73296667	0.83[EUR][1000 genomes]
rs73296682	0.85[EUR][1000 genomes]
rs73298912	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73298913	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73298915	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73298930	0.91[EUR][1000 genomes]
rs73900501	0.86[EUR][1000 genomes]
rs8116145	0.91[EUR][1000 genomes]
rs8116146	0.91[EUR][1000 genomes]
rs8117208	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8121629	0.83[EUR][1000 genomes]
rs8121889	0.91[EUR][1000 genomes]
rs8121931	0.98[EUR][1000 genomes]
rs8121938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8122043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8122127	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8123670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs945980	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs950519	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22452800-22464000	Weak transcription	Gastric	stomach
2	chr20:22453200-22454800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22454200-22455200	Enhancers	Stomach Mucosa	stomach

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