Variant report

Variant	rs11907482
Chromosome Location	chr20:22472251-22472252
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22470520..22472530-chr20:22479077..22481947,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11087380	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11906432	0.92[EUR][1000 genomes]
rs12624718	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12624722	0.92[EUR][1000 genomes]
rs12624953	0.92[EUR][1000 genomes]
rs1337922	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1415813	0.92[EUR][1000 genomes]
rs1415814	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16984013	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs17753624	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17753672	0.92[EUR][1000 genomes]
rs17753702	0.95[EUR][1000 genomes]
rs2404164	0.88[EUR][1000 genomes]
rs56838056	0.88[EUR][1000 genomes]
rs6048124	0.93[EUR][1000 genomes]
rs6048129	0.97[EUR][1000 genomes]
rs6048131	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6048132	0.95[EUR][1000 genomes]
rs6048133	0.97[EUR][1000 genomes]
rs60555721	0.88[EUR][1000 genomes]
rs61425731	1.00[EUR][1000 genomes]
rs61665161	0.88[EUR][1000 genomes]
rs66530603	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7269344	0.88[EUR][1000 genomes]
rs73298912	0.88[EUR][1000 genomes]
rs73298913	0.88[EUR][1000 genomes]
rs73298915	0.88[EUR][1000 genomes]
rs73298930	0.92[EUR][1000 genomes]
rs73900501	0.97[EUR][1000 genomes]
rs8116145	0.92[EUR][1000 genomes]
rs8116146	0.92[EUR][1000 genomes]
rs8117208	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8121889	0.92[EUR][1000 genomes]
rs8121931	0.86[EUR][1000 genomes]
rs8121938	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8122043	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8122127	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8123670	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs945980	0.81[EUR][1000 genomes]
rs950519	0.88[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22469800-22475400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22471200-22473600	Enhancers	Liver	Liver
3	chr20:22471200-22473600	Enhancers	Stomach Mucosa	stomach
4	chr20:22471400-22475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr20:22471800-22475600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:22472000-22472400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr20:22472000-22473200	Weak transcription	Pancreas	Pancrea
8	chr20:22472000-22475400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr20:22472000-22475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr20:22472200-22472600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr20:22472200-22473400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:22472200-22473800	Enhancers	A549	lung
13	chr20:22472200-22474000	Enhancers	HepG2	liver
14	chr20:22472200-22480000	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links