Variant report

Variant	rs17826724
Chromosome Location	chr14:66068320-66068321
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65878369..65881220-chr14:66065484..66068700,4	MCF-7	breast:
2	chr14:66066064..66069081-chr14:66080288..66082777,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11844747	1.00[CEU][hapmap]
rs11849252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849862	1.00[CEU][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11850847	1.00[CEU][hapmap]
rs11851013	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11851772	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12431420	1.00[CEU][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12433827	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12434585	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12435908	1.00[CEU][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12437427	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17246035	1.00[CEU][hapmap]
rs17246259	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17826580	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17826736	1.00[CEU][hapmap];0.87[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17826790	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17826796	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17826820	0.89[AMR][1000 genomes]
rs1953417	1.00[CEU][hapmap]
rs1998035	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs2073294	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2152375	1.00[CEU][hapmap]
rs2184602	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2268957	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs2268958	1.00[CEU][hapmap]
rs2268960	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes]
rs2300867	0.85[AMR][1000 genomes]
rs2300871	1.00[CEU][hapmap]
rs2300872	1.00[CEU][hapmap]
rs56156482	0.90[EUR][1000 genomes]
rs57012661	0.85[AMR][1000 genomes]
rs57201867	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57451368	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58032513	0.85[AMR][1000 genomes]
rs58115860	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59117465	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59204447	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59561356	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59676254	0.82[EUR][1000 genomes]
rs59685862	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59921977	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60396689	0.86[EUR][1000 genomes]
rs60554055	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60942639	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61038704	0.83[AMR][1000 genomes]
rs61315421	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61533229	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7140261	0.84[EUR][1000 genomes]
rs7145574	1.00[CEU][hapmap]
rs7153679	1.00[CEU][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73268512	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73268521	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73268524	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73268557	0.87[AMR][1000 genomes]
rs73284121	0.82[EUR][1000 genomes]
rs73284133	0.82[EUR][1000 genomes]
rs73284143	0.86[EUR][1000 genomes]
rs73286118	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73286169	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73286173	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8005309	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8018909	0.86[EUR][1000 genomes]
rs8019491	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs9635251	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66058200-66079000	Weak transcription	Primary T cells from cord blood	blood
2	chr14:66058600-66070600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:66059200-66082600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:66061800-66081800	Weak transcription	Dnd41	blood
5	chr14:66061800-66099000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:66062000-66082400	Weak transcription	Primary B cells from cord blood	blood
7	chr14:66066000-66071000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:66066000-66071200	Weak transcription	Stomach Mucosa	stomach
9	chr14:66066200-66084000	Weak transcription	Fetal Intestine Large	intestine
10	chr14:66066600-66071000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr14:66066600-66084000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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