Variant report

Variant	rs7140261
Chromosome Location	chr14:65973956-65973957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65960132..65963977-chr14:65971617..65974419,3	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11844747	0.85[EUR][1000 genomes]
rs11849252	0.84[EUR][1000 genomes]
rs11849862	0.87[EUR][1000 genomes]
rs11850847	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11851013	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11851772	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12431420	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12433827	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12434585	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12434854	0.83[EUR][1000 genomes]
rs12437427	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17246007	0.83[EUR][1000 genomes]
rs17246035	0.85[EUR][1000 genomes]
rs17246042	0.85[EUR][1000 genomes]
rs17246259	0.85[EUR][1000 genomes]
rs17826580	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17826724	0.84[EUR][1000 genomes]
rs17826736	0.80[EUR][1000 genomes]
rs17826790	0.87[EUR][1000 genomes]
rs17826796	0.87[EUR][1000 genomes]
rs17826820	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1953417	0.85[EUR][1000 genomes]
rs1998035	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2073294	0.91[EUR][1000 genomes]
rs2152375	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2184602	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2268957	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2268958	0.82[EUR][1000 genomes]
rs2300872	0.82[EUR][1000 genomes]
rs56156482	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57201867	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57451368	0.89[EUR][1000 genomes]
rs58032513	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58115860	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59117465	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59204447	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59561356	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59676254	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59685862	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59822422	0.85[EUR][1000 genomes]
rs59921977	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60396689	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60554055	0.89[EUR][1000 genomes]
rs60852857	0.97[ASN][1000 genomes]
rs60927973	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60942639	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61315421	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61533229	0.91[EUR][1000 genomes]
rs7145574	0.85[EUR][1000 genomes]
rs7150362	0.83[EUR][1000 genomes]
rs7150564	0.85[EUR][1000 genomes]
rs7153679	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73268512	0.85[EUR][1000 genomes]
rs73268521	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73268524	0.87[EUR][1000 genomes]
rs73284121	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73284133	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73284143	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73286118	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73286169	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73286173	0.85[EUR][1000 genomes]
rs8005309	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8018909	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs884247	0.85[EUR][1000 genomes]
rs9635251	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:65963600-65975000	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65963600-65975800	Weak transcription	Primary T cells from cord blood	blood
4	chr14:65963600-65994400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65968200-65974800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:65968400-65974200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:65969800-65978800	Weak transcription	Ovary	ovary
8	chr14:65969800-65980800	Weak transcription	Pancreas	Pancrea
9	chr14:65969800-65994600	Weak transcription	Left Ventricle	heart
10	chr14:65970200-65975600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:65970200-65985400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:65970200-65985400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:65970400-65981600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:65970600-65974200	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:65971400-65984200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:65973400-65974200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr14:65973400-65974200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr14:65973400-65974200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr14:65973600-65974000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:65973600-65974000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr14:65973600-65974000	ZNF genes & repeats	GM12878-XiMat	blood
22	chr14:65973600-65974200	Enhancers	Duodenum Mucosa	Duodenum
23	chr14:65973600-65974400	Enhancers	Small Intestine	intestine
24	chr14:65973600-65974600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:65973600-65975200	Enhancers	Stomach Mucosa	stomach
26	chr14:65973800-65974000	Weak transcription	HepG2	liver
27	chr14:65973800-65974200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
28	chr14:65973800-65974400	Strong transcription	Primary B cells from cord blood	blood
29	chr14:65973800-65974600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr14:65973800-65980800	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links