Variant report

Variant	rs7145574
Chromosome Location	chr14:65884402-65884403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
2	chr14:65879358..65881230-chr14:65883604..65885446,2	K562	blood:
3	chr14:65710525..65712418-chr14:65882853..65884868,2	MCF-7	breast:
4	chr14:65876760..65881066-chr14:65882756..65887312,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255002	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10083344	0.84[EUR][1000 genomes]
rs10083346	0.82[EUR][1000 genomes]
rs10083348	0.82[EUR][1000 genomes]
rs10083421	0.82[EUR][1000 genomes]
rs10083485	0.82[EUR][1000 genomes]
rs10083488	0.82[EUR][1000 genomes]
rs10083525	0.82[EUR][1000 genomes]
rs10130760	0.82[EUR][1000 genomes]
rs10136947	0.82[EUR][1000 genomes]
rs10136953	0.80[EUR][1000 genomes]
rs10138765	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10146374	0.85[EUR][1000 genomes]
rs11844348	0.82[EUR][1000 genomes]
rs11844747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845794	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[EUR][1000 genomes]
rs11849252	1.00[CEU][hapmap]
rs11849862	0.80[ASN][1000 genomes]
rs11850160	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[EUR][1000 genomes]
rs11850163	1.00[CEU][hapmap]
rs11850847	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes]
rs11851013	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs11851772	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs12431420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12433416	0.82[EUR][1000 genomes]
rs12433423	0.82[EUR][1000 genomes]
rs12433827	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs12434585	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12434854	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437427	0.87[EUR][1000 genomes]
rs17246007	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17246035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17246042	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17826448	0.80[EUR][1000 genomes]
rs17826466	0.82[EUR][1000 genomes]
rs17826580	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17826724	1.00[CEU][hapmap]
rs17826736	1.00[CEU][hapmap]
rs17826796	0.80[ASN][1000 genomes]
rs1953417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2073294	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2152375	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2184602	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28502530	0.82[EUR][1000 genomes]
rs28581569	0.82[EUR][1000 genomes]
rs28668545	0.87[EUR][1000 genomes]
rs56156482	0.83[EUR][1000 genomes]
rs56756005	0.82[EUR][1000 genomes]
rs57298509	0.83[EUR][1000 genomes]
rs57640052	0.83[EUR][1000 genomes]
rs58115860	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58155831	0.82[EUR][1000 genomes]
rs59117465	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59561356	0.81[EUR][1000 genomes]
rs59676254	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59685862	0.83[EUR][1000 genomes]
rs59822422	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59921977	0.81[EUR][1000 genomes]
rs60396689	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60927973	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61315421	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61533229	0.80[EUR][1000 genomes]
rs7140261	0.85[EUR][1000 genomes]
rs7150362	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7150564	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153679	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs73282213	0.87[EUR][1000 genomes]
rs73282223	0.82[EUR][1000 genomes]
rs73282230	0.82[EUR][1000 genomes]
rs73282232	0.82[EUR][1000 genomes]
rs73282237	0.82[EUR][1000 genomes]
rs73282242	0.82[EUR][1000 genomes]
rs73282250	0.87[EUR][1000 genomes]
rs73282256	0.82[EUR][1000 genomes]
rs73282260	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73284121	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73284133	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73284143	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73286169	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8005309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs8017202	0.82[EUR][1000 genomes]
rs8018909	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8022077	0.82[EUR][1000 genomes]
rs8022350	0.82[EUR][1000 genomes]
rs8023130	0.82[EUR][1000 genomes]
rs884247	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9635251	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65877600-65885400	Active TSS	GM12878-XiMat	blood
2	chr14:65880600-65886400	Weak transcription	K562	blood
3	chr14:65880600-65899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:65880600-65899400	Weak transcription	Small Intestine	intestine
5	chr14:65880800-65888000	Weak transcription	Ovary	ovary
6	chr14:65880800-65896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65880800-65898000	Weak transcription	Gastric	stomach
8	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:65881000-65888000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:65881000-65888000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:65881000-65899400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
13	chr14:65881600-65885400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:65881600-65886600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr14:65881600-65888000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:65881600-65888000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:65881600-65888000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:65881600-65888400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr14:65881600-65889600	Weak transcription	Fetal Brain Male	brain
20	chr14:65881800-65888000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr14:65881800-65888600	Weak transcription	Brain Angular Gyrus	brain
22	chr14:65881800-65895000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
25	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
26	chr14:65882000-65886400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:65882000-65888000	Weak transcription	NH-A	brain
28	chr14:65882200-65888000	Weak transcription	HUVEC	blood vessel
29	chr14:65882200-65890600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr14:65882400-65884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr14:65882400-65886000	Weak transcription	Brain Substantia Nigra	brain
32	chr14:65882400-65888600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:65882400-65890400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr14:65882600-65884600	Enhancers	Dnd41	blood
35	chr14:65882600-65900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr14:65882800-65888000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr14:65882800-65890400	Weak transcription	Brain Germinal Matrix	brain
38	chr14:65883200-65885400	Weak transcription	Primary T cells from cord blood	blood
39	chr14:65883200-65888000	Weak transcription	Brain Anterior Caudate	brain
40	chr14:65883200-65888000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr14:65883400-65888000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:65883800-65886400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:65883800-65888000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:65883800-65890600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr14:65884000-65888000	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:65884200-65885600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:65884200-65890600	Weak transcription	Stomach Mucosa	stomach

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