Variant report

Variant	rs59117465
Chromosome Location	chr14:66052472-66052473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66051562..66054296-chr14:66056670..66058762,2	MCF-7	breast:
2	chr13:61117258..61118090-chr14:66052437..66053220,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11844747	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11849252	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11849862	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11850847	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11851013	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11851772	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12431420	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12433827	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12434585	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12435908	0.87[AMR][1000 genomes]
rs12437427	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17246007	0.82[ASN][1000 genomes]
rs17246035	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17246042	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17246259	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17826580	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17826724	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17826736	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17826790	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17826796	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17826820	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1953417	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1998035	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2073294	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2152375	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2184602	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2268957	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2268958	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2268963	0.89[ASN][1000 genomes]
rs2300867	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2300871	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2300872	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56156482	0.81[EUR][1000 genomes]
rs57201867	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57451368	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58032513	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58115860	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58227678	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59204447	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59561356	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59676254	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59685862	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59822422	0.80[EUR][1000 genomes]
rs59921977	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60396689	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60554055	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60942639	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61315421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61533229	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7140261	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7145574	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7150362	0.80[ASN][1000 genomes]
rs7150564	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7153679	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73268512	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73268521	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73268524	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73268557	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73284121	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73284133	0.89[EUR][1000 genomes]
rs73284143	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73286118	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73286169	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73286173	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8005309	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8018909	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8019491	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs884247	0.80[EUR][1000 genomes]
rs9635251	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:66032000-66060200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:66032600-66060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:66033200-66053600	Weak transcription	Small Intestine	intestine
6	chr14:66035800-66054800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:66035800-66057400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:66039200-66054400	Weak transcription	Primary T cells from cord blood	blood
9	chr14:66039800-66058000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:66039800-66061200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr14:66041000-66059000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:66041000-66060800	Weak transcription	Dnd41	blood
13	chr14:66041200-66060800	Weak transcription	GM12878-XiMat	blood
14	chr14:66041200-66061000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:66043800-66061000	Weak transcription	Fetal Intestine Small	intestine
16	chr14:66049800-66060800	Weak transcription	Primary B cells from cord blood	blood
17	chr14:66052000-66052600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:66052000-66052600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:66052400-66053000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:66052400-66061000	Weak transcription	Stomach Mucosa	stomach

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