Variant report

Variant	rs59822422
Chromosome Location	chr14:65889566-65889567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10083344	0.84[EUR][1000 genomes]
rs10083346	0.82[EUR][1000 genomes]
rs10083348	0.82[EUR][1000 genomes]
rs10083421	0.82[EUR][1000 genomes]
rs10083485	0.82[EUR][1000 genomes]
rs10083488	0.82[EUR][1000 genomes]
rs10083525	0.82[EUR][1000 genomes]
rs10130760	0.82[EUR][1000 genomes]
rs10136947	0.82[EUR][1000 genomes]
rs10136953	0.80[EUR][1000 genomes]
rs10138765	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10146374	0.85[EUR][1000 genomes]
rs11844348	0.82[EUR][1000 genomes]
rs11844747	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11845794	0.80[EUR][1000 genomes]
rs11850160	0.80[EUR][1000 genomes]
rs11850847	0.89[EUR][1000 genomes]
rs11851013	0.81[EUR][1000 genomes]
rs11851772	0.81[EUR][1000 genomes]
rs12431420	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12433416	0.82[EUR][1000 genomes]
rs12433423	0.82[EUR][1000 genomes]
rs12433827	0.80[EUR][1000 genomes]
rs12434585	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12434854	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437427	0.87[EUR][1000 genomes]
rs17246007	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17246035	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17246042	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17826448	0.80[EUR][1000 genomes]
rs17826466	0.82[EUR][1000 genomes]
rs17826580	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1953417	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2073294	0.81[EUR][1000 genomes]
rs2152375	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2184602	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28502530	0.82[EUR][1000 genomes]
rs28581569	0.82[EUR][1000 genomes]
rs28668545	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56156482	0.83[EUR][1000 genomes]
rs56756005	0.82[EUR][1000 genomes]
rs57298509	0.83[EUR][1000 genomes]
rs57640052	0.83[EUR][1000 genomes]
rs58115860	0.83[EUR][1000 genomes]
rs58155831	0.82[EUR][1000 genomes]
rs59117465	0.80[EUR][1000 genomes]
rs59561356	0.81[EUR][1000 genomes]
rs59676254	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59685862	0.83[EUR][1000 genomes]
rs59921977	0.81[EUR][1000 genomes]
rs60396689	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60927973	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61315421	0.80[EUR][1000 genomes]
rs61533229	0.80[EUR][1000 genomes]
rs7140261	0.85[EUR][1000 genomes]
rs7145574	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7150362	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7150564	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73282213	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73282223	0.82[EUR][1000 genomes]
rs73282230	0.82[EUR][1000 genomes]
rs73282232	0.82[EUR][1000 genomes]
rs73282237	0.82[EUR][1000 genomes]
rs73282242	0.82[EUR][1000 genomes]
rs73282250	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73282256	0.82[EUR][1000 genomes]
rs73282260	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73284121	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73284133	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73284143	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73286169	0.83[EUR][1000 genomes]
rs8005309	0.83[EUR][1000 genomes]
rs8017202	0.82[EUR][1000 genomes]
rs8018909	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8022077	0.82[EUR][1000 genomes]
rs8022350	0.82[EUR][1000 genomes]
rs8023130	0.82[EUR][1000 genomes]
rs884247	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9635251	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880600-65899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:65880600-65899400	Weak transcription	Small Intestine	intestine
3	chr14:65880800-65896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65880800-65898000	Weak transcription	Gastric	stomach
5	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:65881000-65899400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
8	chr14:65881600-65889600	Weak transcription	Fetal Brain Male	brain
9	chr14:65881800-65895000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
12	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
13	chr14:65882200-65890600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr14:65882400-65890400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:65882600-65900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:65882800-65890400	Weak transcription	Brain Germinal Matrix	brain
17	chr14:65883800-65890600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:65884200-65890600	Weak transcription	Stomach Mucosa	stomach
19	chr14:65886200-65895600	Weak transcription	Primary T cells from cord blood	blood
20	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:65886800-65890600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:65886800-65890800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr14:65886800-65898000	Weak transcription	Dnd41	blood
24	chr14:65887000-65892600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:65887400-65898400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:65888000-65889600	Enhancers	Placenta	Placenta
27	chr14:65888200-65891400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:65888200-65892800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:65888200-65898800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:65888200-65898800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr14:65888400-65898800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:65888400-65905400	Weak transcription	Ovary	ovary
33	chr14:65888800-65892200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:65888800-65898800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr14:65889000-65889600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:65889000-65898800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr14:65889000-65901400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:65889200-65890200	Weak transcription	Brain Anterior Caudate	brain
39	chr14:65889200-65890400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:65889200-65894000	Weak transcription	Brain Substantia Nigra	brain
41	chr14:65889200-65894400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr14:65889200-65894600	Weak transcription	Brain Angular Gyrus	brain
43	chr14:65889200-65898000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr14:65889200-65899400	Weak transcription	Colon Smooth Muscle	Colon
45	chr14:65889200-65899400	Weak transcription	NHDF-Ad	bronchial
46	chr14:65889400-65889600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:65889400-65891200	Weak transcription	NH-A	brain
48	chr14:65889400-65891200	Weak transcription	Osteobl	bone
49	chr14:65889400-65892600	Weak transcription	K562	blood
50	chr14:65889400-65894600	Weak transcription	Brain Hippocampus Middle	brain

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