Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17059337	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17828460	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17829411	0.90[MEX][hapmap]
rs2326972	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6902478	0.83[EUR][1000 genomes]
rs6902528	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6902922	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6905090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908038	0.83[EUR][1000 genomes]
rs6917425	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6924980	0.83[EUR][1000 genomes]
rs6930778	0.89[EUR][1000 genomes]
rs6936854	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7739307	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7774053	0.83[EUR][1000 genomes]
rs9483154	0.84[EUR][1000 genomes]
rs9492660	0.83[EUR][1000 genomes]
rs9492661	0.80[EUR][1000 genomes]
rs9492662	0.83[EUR][1000 genomes]
rs9492663	0.83[EUR][1000 genomes]
rs9492665	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130953400-130969000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:130961400-130965200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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