Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17059337	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17828460	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17828682	0.89[EUR][1000 genomes]
rs2326972	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6902478	0.83[EUR][1000 genomes]
rs6902528	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6902922	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6905090	0.89[EUR][1000 genomes]
rs6908038	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6917425	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6924980	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6936854	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7739307	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7774053	0.83[EUR][1000 genomes]
rs9483154	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9492660	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9492661	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9492662	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9492663	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9492665	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130941400-130947000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:130941600-130946400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:130941800-130946400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:130941800-130946400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:130941800-130947000	Weak transcription	NH-A	brain
6	chr6:130942000-130946800	Weak transcription	Osteobl	bone
7	chr6:130942600-130944000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:130943800-130946400	Weak transcription	Muscle Satellite Cultured Cells	--

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