Variant report

Variant	rs6924980
Chromosome Location	chr6:130943247-130943248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17059337	0.86[EUR][1000 genomes]
rs17059344	1.00[ASN][1000 genomes]
rs17828460	0.86[EUR][1000 genomes]
rs17828682	0.83[EUR][1000 genomes]
rs17829411	0.90[MEX][hapmap]
rs2326972	0.83[EUR][1000 genomes]
rs4144215	0.98[ASN][1000 genomes]
rs56677103	0.94[ASN][1000 genomes]
rs60789680	0.93[ASN][1000 genomes]
rs61286481	0.98[ASN][1000 genomes]
rs6902478	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902528	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6902922	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6905090	0.83[EUR][1000 genomes]
rs6908038	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917425	0.86[EUR][1000 genomes]
rs6930778	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6936854	0.86[EUR][1000 genomes]
rs72499767	0.98[ASN][1000 genomes]
rs72988292	0.98[ASN][1000 genomes]
rs72988295	0.98[ASN][1000 genomes]
rs72988296	1.00[ASN][1000 genomes]
rs72990208	1.00[ASN][1000 genomes]
rs72990221	1.00[ASN][1000 genomes]
rs72990296	0.97[ASN][1000 genomes]
rs72990301	1.00[ASN][1000 genomes]
rs72992209	1.00[ASN][1000 genomes]
rs72992224	0.95[ASN][1000 genomes]
rs72992225	0.95[ASN][1000 genomes]
rs7739307	0.86[EUR][1000 genomes]
rs7774053	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9483154	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492659	1.00[ASN][1000 genomes]
rs9492660	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492661	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9492662	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492663	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492665	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492667	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130941400-130947000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:130941600-130946400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:130941800-130946400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:130941800-130946400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:130941800-130947000	Weak transcription	NH-A	brain
6	chr6:130942000-130946800	Weak transcription	Osteobl	bone
7	chr6:130942400-130943400	Weak transcription	NHDF-Ad	bronchial
8	chr6:130942600-130944000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:130943200-130943600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:130943200-130943600	Weak transcription	Muscle Satellite Cultured Cells	--

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