Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17059337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17828460	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17828682	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2326972	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6902478	0.86[EUR][1000 genomes]
rs6902528	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6902922	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6905090	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6908038	0.86[EUR][1000 genomes]
rs6917425	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924980	0.86[EUR][1000 genomes]
rs6930778	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6936854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774053	0.86[EUR][1000 genomes]
rs9483154	0.87[EUR][1000 genomes]
rs9492660	0.86[EUR][1000 genomes]
rs9492661	0.84[EUR][1000 genomes]
rs9492662	0.86[EUR][1000 genomes]
rs9492663	0.86[EUR][1000 genomes]
rs9492665	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130946800-130948200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:130947200-130948400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:130947400-130948400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:130947800-130952800	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:130947800-130953000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:130947800-130953000	Weak transcription	HSMMtube	muscle
7	chr6:130947800-130953400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:130948000-130949800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:130948000-130950400	Weak transcription	NHDF-Ad	bronchial
10	chr6:130948000-130951400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:130948000-130951600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:130948000-130953800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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