Variant report

Variant	rs17865069
Chromosome Location	chr4:118293296-118293297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13340325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17864974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865288	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865969	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866197	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866828	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867049	0.89[AFR][1000 genomes]
rs17869353	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869354	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875019	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875110	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827907	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879825	chr4:118292314-118333367	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118282000-118302000	Weak transcription	HMEC	breast
2	chr4:118292200-118295800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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