Variant report

Variant	rs17865288
Chromosome Location	chr4:118274599-118274600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13340325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17864974	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865069	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865070	0.84[YRI][hapmap]
rs17865911	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865969	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866197	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866829	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867049	0.88[AFR][1000 genomes]
rs17869353	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869354	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875019	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875110	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4385146	1.00[YRI][hapmap]
rs6827907	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000847	chr4:118186059-118285838	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118258800-118278600	Weak transcription	HMEC	breast
2	chr4:118274200-118274800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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