Variant report

Variant	rs17866828
Chromosome Location	chr4:118276042-118276043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13340325	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17864974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865288	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865969	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866197	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866829	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867049	0.86[AFR][1000 genomes]
rs17869353	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869354	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875110	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827907	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000847	chr4:118186059-118285838	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118258800-118278600	Weak transcription	HMEC	breast
2	chr4:118275200-118277200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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