The 2.0 version of rSNPBase

Variant report

Variant rs1801783
Chromosome Location chr1:227180858-227180859
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227158400-227183000 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr1:227160800-227181800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:227162400-227181600 Weak transcription NHEK skin
5 chr1:227163400-227191200 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr1:227173400-227183400 Strong transcription Cortex derived primary cultured neurospheres brain
7 chr1:227174800-227182000 Weak transcription NHDF-Ad bronchial
8 chr1:227175200-227181200 Strong transcription Fetal Muscle Leg muscle
9 chr1:227175200-227198400 Weak transcription A549 lung
10 chr1:227175200-227210200 Weak transcription HMEC breast
11 chr1:227175400-227182600 Genic enhancers Fetal Intestine Small intestine
12 chr1:227175600-227181600 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr1:227175600-227182200 Weak transcription Brain Germinal Matrix brain
14 chr1:227175600-227183200 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr1:227175600-227216200 Weak transcription H9 Cell Line embryonic stem cell
16 chr1:227175800-227181800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr1:227175800-227181800 Enhancers Fetal Intestine Large intestine
18 chr1:227176000-227181800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:227176000-227181800 Strong transcription Fetal Muscle Trunk muscle
20 chr1:227176000-227190200 Weak transcription Esophagus oesophagus
21 chr1:227176000-227191800 Weak transcription Placenta Amnion Placenta Amnion
22 chr1:227176000-227216400 Weak transcription NHLF lung
23 chr1:227176200-227181800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
24 chr1:227176400-227190400 Weak transcription Osteobl bone
25 chr1:227176600-227181800 Weak transcription H1 Cell Line embryonic stem cell
26 chr1:227176600-227182400 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr1:227176600-227190000 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr1:227176800-227181400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr1:227177000-227181600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:227177000-227181600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr1:227177000-227181800 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr1:227177000-227181800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:227177200-227181800 Weak transcription Aorta Aorta
34 chr1:227177200-227181800 Weak transcription Gastric stomach
35 chr1:227177200-227188600 Weak transcription Fetal Lung lung
36 chr1:227177400-227181800 Weak transcription Brain Angular Gyrus brain
37 chr1:227177400-227255200 Weak transcription Small Intestine intestine
38 chr1:227177600-227181600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr1:227177600-227181600 Weak transcription Fetal Brain Female brain
40 chr1:227178000-227183200 Strong transcription Fetal Stomach stomach
41 chr1:227178200-227183000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:227178200-227188600 Weak transcription HSMMtube muscle
43 chr1:227178400-227181000 Weak transcription Brain Cingulate Gyrus brain
44 chr1:227178400-227181600 Weak transcription Stomach Smooth Muscle stomach
45 chr1:227178400-227181800 Weak transcription Colonic Mucosa Colon
46 chr1:227178400-227181800 Weak transcription Left Ventricle heart
47 chr1:227178400-227181800 Weak transcription Lung lung
48 chr1:227178400-227181800 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr1:227178400-227182200 Weak transcription Brain Anterior Caudate brain
50 chr1:227178400-227190400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015