The 2.0 version of rSNPBase

Variant report

Variant rs11801012
Chromosome Location chr1:227350198-227350199
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227287400-227360800 Weak transcription Psoas Muscle Psoas
2 chr1:227288400-227398000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:227298600-227351800 Weak transcription Hela-S3 cervix
4 chr1:227300000-227379800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr1:227316600-227352200 Weak transcription Gastric stomach
6 chr1:227317000-227374200 Weak transcription HepG2 liver
7 chr1:227326600-227355200 Weak transcription Small Intestine intestine
8 chr1:227328000-227354400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:227328600-227351600 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr1:227328800-227354200 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr1:227329600-227358400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr1:227329600-227380000 Weak transcription Aorta Aorta
13 chr1:227331600-227355000 Weak transcription Brain Anterior Caudate brain
14 chr1:227331600-227358400 Weak transcription Brain Cingulate Gyrus brain
15 chr1:227332800-227350200 Weak transcription Lung lung
16 chr1:227332800-227354600 Weak transcription Ovary ovary
17 chr1:227333200-227354800 Weak transcription Stomach Smooth Muscle stomach
18 chr1:227333400-227354000 Weak transcription HUES6 Cell Line embryonic stem cell
19 chr1:227333400-227354400 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr1:227333400-227358400 Weak transcription Osteobl bone
21 chr1:227333400-227359000 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr1:227333400-227381000 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:227333400-227405600 Weak transcription Adipose Nuclei Adipose
24 chr1:227334800-227371800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr1:227339600-227354000 Weak transcription HUES48 Cell Line embryonic stem cell
26 chr1:227343200-227350600 Weak transcription Stomach Mucosa stomach
27 chr1:227343200-227352400 Weak transcription Pancreatic Islets Pancreatic Islet
28 chr1:227343200-227400400 Weak transcription A549 lung
29 chr1:227343600-227358400 Weak transcription Colon Smooth Muscle Colon
30 chr1:227346800-227351200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:227346800-227354000 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr1:227346800-227355000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:227346800-227357400 Weak transcription Brain Substantia Nigra brain
34 chr1:227346800-227357800 Weak transcription NHDF-Ad bronchial
35 chr1:227346800-227358000 Weak transcription Muscle Satellite Cultured Cells --
36 chr1:227346800-227358200 Weak transcription Right Ventricle heart
37 chr1:227346800-227358400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:227346800-227366600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr1:227346800-227379800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:227346800-227403800 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:227346800-227405800 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:227346800-227406800 Weak transcription Fetal Kidney kidney
43 chr1:227347200-227378000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr1:227347800-227354200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr1:227347800-227357400 Weak transcription Left Ventricle heart
46 chr1:227347800-227363600 Weak transcription Fetal Stomach stomach
47 chr1:227347800-227385800 Weak transcription Fetal Intestine Small intestine
48 chr1:227347800-227390400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr1:227348000-227350800 Weak transcription Duodenum Mucosa Duodenum
50 chr1:227348000-227358200 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015