Variant report

Variant	rs11809905
Chromosome Location	chr1:227522241-227522242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:227504519..227508787-chr1:227521188..227524866,7	K562	blood:
2	chr1:227512596..227514265-chr1:227521863..227524248,2	K562	blood:
3	chr1:227521100..227522891-chr1:227528469..227530214,2	K562	blood:
4	chr1:227515846..227518082-chr1:227521897..227524697,2	MCF-7	breast:
5	chr1:227502332..227510114-chr1:227516981..227526964,21	K562	blood:
6	chr1:227510624..227512509-chr1:227521394..227523406,2	K562	blood:

Variant related genes	Relation type
ENSG00000143776	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11800169	0.80[EUR][1000 genomes]
rs11800364	1.00[ASN][1000 genomes]
rs11800959	1.00[ASN][1000 genomes]
rs11801012	1.00[ASN][1000 genomes]
rs11801282	1.00[ASN][1000 genomes]
rs11802399	1.00[ASN][1000 genomes]
rs11803651	0.87[EUR][1000 genomes]
rs11804181	0.80[EUR][1000 genomes]
rs11804271	0.85[AMR][1000 genomes]
rs11804807	1.00[ASN][1000 genomes]
rs11806721	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807068	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807375	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807425	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807957	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808210	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808670	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808674	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808696	0.85[AMR][1000 genomes]
rs11809113	1.00[ASN][1000 genomes]
rs11811210	1.00[ASN][1000 genomes]
rs11811620	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11811982	1.00[ASN][1000 genomes]
rs11812048	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34125608	1.00[ASN][1000 genomes]
rs35601687	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36055753	0.89[EUR][1000 genomes]
rs41270147	1.00[ASN][1000 genomes]
rs6671926	1.00[ASN][1000 genomes]
rs73096355	1.00[ASN][1000 genomes]
rs73096357	1.00[ASN][1000 genomes]
rs7524967	1.00[ASN][1000 genomes]
rs7530155	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547092	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9660532	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003656	chr1:227034700-227559665	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv535318	chr1:227034700-227559665	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv873242	chr1:227371906-227579344	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv549271	chr1:227411003-227581017	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1001353	chr1:227474785-227660691	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227512000-227523200	Weak transcription	Stomach Mucosa	stomach
2	chr1:227521600-227531400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:227522000-227522400	Weak transcription	K562	blood

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