The 2.0 version of rSNPBase

Variant report

Variant rs11800959
Chromosome Location chr1:227410007-227410008
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227348200-227412200 Weak transcription Fetal Muscle Leg muscle
2 chr1:227370000-227413600 Weak transcription HUES6 Cell Line embryonic stem cell
3 chr1:227375600-227410800 Weak transcription HepG2 liver
4 chr1:227376600-227412600 Weak transcription Fetal Lung lung
5 chr1:227380200-227421800 Weak transcription Ovary ovary
6 chr1:227382000-227414000 Weak transcription iPS-18 Cell Line embryonic stem cell
7 chr1:227383600-227421800 Weak transcription Stomach Smooth Muscle stomach
8 chr1:227386200-227433400 Weak transcription Fetal Stomach stomach
9 chr1:227386400-227413800 Weak transcription Brain Anterior Caudate brain
10 chr1:227387000-227413600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:227387400-227414000 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr1:227390600-227413600 Weak transcription Small Intestine intestine
13 chr1:227396800-227413600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr1:227398200-227413600 Weak transcription NHLF lung
15 chr1:227398800-227411200 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:227398800-227413800 Weak transcription HUES64 Cell Line embryonic stem cell
17 chr1:227399400-227411200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr1:227399400-227415400 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:227399600-227413200 Weak transcription HSMM muscle
20 chr1:227399800-227411000 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr1:227400400-227410800 Weak transcription Brain Angular Gyrus brain
22 chr1:227400400-227410800 Weak transcription Brain Substantia Nigra brain
23 chr1:227400400-227413000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr1:227400400-227413000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:227400400-227426800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr1:227400600-227413000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:227400600-227413000 Weak transcription NHEK skin
28 chr1:227400800-227412800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:227401600-227413400 Weak transcription A549 lung
30 chr1:227402400-227410800 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr1:227402400-227430600 Weak transcription Pancreas Pancrea
32 chr1:227403800-227412800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:227404000-227413800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:227404400-227412800 Weak transcription Muscle Satellite Cultured Cells --
35 chr1:227405600-227421800 Weak transcription Gastric stomach
36 chr1:227406400-227417200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:227407200-227411200 Weak transcription Brain Cingulate Gyrus brain
38 chr1:227407200-227413400 Weak transcription NHDF-Ad bronchial
39 chr1:227407200-227432400 Weak transcription Right Ventricle heart
40 chr1:227407800-227410200 Weak transcription Fetal Intestine Large intestine
41 chr1:227407800-227410600 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:227407800-227410800 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr1:227407800-227411400 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:227407800-227412600 Weak transcription Pancreatic Islets Pancreatic Islet
45 chr1:227408000-227413000 Weak transcription Primary hematopoietic stem cells blood
46 chr1:227408000-227413600 Weak transcription Left Ventricle heart
47 chr1:227408400-227410600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:227408400-227410600 Weak transcription Fetal Intestine Small intestine
49 chr1:227408400-227410800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:227408400-227410800 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015