The 2.0 version of rSNPBase

Variant report

Variant rs34125608
Chromosome Location chr1:227503799-227503800
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227490200-227503800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:227496200-227504800 Weak transcription Gastric stomach
3 chr1:227499400-227503800 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:227500600-227504800 Weak transcription Lung lung
5 chr1:227500800-227504600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:227500800-227504600 Weak transcription Pancreas Pancrea
7 chr1:227500800-227506600 Active TSS K562 blood
8 chr1:227501400-227506800 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr1:227501400-227507000 Active TSS HUES48 Cell Line embryonic stem cell
10 chr1:227501600-227507000 Active TSS Pancreatic Islets Pancreatic Islet
11 chr1:227501800-227505400 Active TSS Right Atrium heart
12 chr1:227501800-227505600 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:227501800-227505800 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:227501800-227506600 Active TSS Fetal Stomach stomach
15 chr1:227501800-227506600 Active TSS Rectal Mucosa Donor 29 rectum
16 chr1:227501800-227506600 Active TSS HMEC breast
17 chr1:227501800-227506600 Active TSS NHEK skin
18 chr1:227501800-227506800 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr1:227501800-227506800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
20 chr1:227501800-227506800 Active TSS Brain Anterior Caudate brain
21 chr1:227501800-227506800 Active TSS A549 lung
22 chr1:227501800-227506800 Active TSS NHLF lung
23 chr1:227501800-227507000 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:227501800-227507000 Active TSS Brain Inferior Temporal Lobe brain
25 chr1:227501800-227507000 Active TSS Duodenum Smooth Muscle Duodenum
26 chr1:227501800-227507000 Active TSS Fetal Kidney kidney
27 chr1:227501800-227507200 Active TSS Duodenum Mucosa Duodenum
28 chr1:227501800-227507200 Active TSS NHDF-Ad bronchial
29 chr1:227502000-227503800 Active TSS Rectal Smooth Muscle rectum
30 chr1:227502000-227504600 Active TSS HepG2 liver
31 chr1:227502000-227506600 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
32 chr1:227502000-227506600 Active TSS Muscle Satellite Cultured Cells --
33 chr1:227502000-227506600 Active TSS Colonic Mucosa Colon
34 chr1:227502000-227506600 Active TSS Skeletal Muscle Male skeletal muscle
35 chr1:227502000-227506600 Active TSS HUVEC blood vessel
36 chr1:227502000-227506800 Active TSS Cortex derived primary cultured neurospheres brain
37 chr1:227502000-227506800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:227502000-227506800 Active TSS Stomach Smooth Muscle stomach
39 chr1:227502000-227506800 Active TSS NH-A brain
40 chr1:227502000-227507000 Active TSS ES-I3 Cell Line embryonic stem cell
41 chr1:227502000-227507000 Active TSS ES-WA7 Cell Line embryonic stem cell
42 chr1:227502000-227507000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr1:227502000-227507000 Active TSS HUES6 Cell Line embryonic stem cell
44 chr1:227502000-227507000 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
45 chr1:227502000-227507000 Active TSS Brain Angular Gyrus brain
46 chr1:227502000-227507000 Active TSS Brain Dorsolateral Prefrontal Cortex brain
47 chr1:227502000-227507000 Active TSS Brain Substantia Nigra brain
48 chr1:227502000-227507000 Active TSS HSMMtube muscle
49 chr1:227502000-227507200 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr1:227502000-227507200 Active TSS Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015