Variant report

Variant	rs1826347
Chromosome Location	chr3:49671654-49671655
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1050088	0.82[MEX][hapmap]
rs1060962	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10865955	0.82[MEX][hapmap]
rs11130199	0.82[MEX][hapmap]
rs11130212	0.96[AFR][1000 genomes]
rs11919311	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12497288	0.90[AFR][1000 genomes]
rs1873626	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs2005557	1.00[CEU][hapmap]
rs2131104	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs2131109	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2329020	1.00[CEU][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap]
rs3197999	0.86[JPT][hapmap]
rs35701831	0.82[MEX][hapmap]
rs3870338	0.82[MEX][hapmap]
rs3924462	0.82[MEX][hapmap];0.89[MKK][hapmap]
rs4855835	0.92[AFR][1000 genomes]
rs4855839	0.85[MEX][hapmap]
rs4855852	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs4855859	0.86[MEX][hapmap];0.89[MKK][hapmap]
rs4855864	0.82[MEX][hapmap]
rs4855881	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap]
rs4855884	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs6782577	0.96[CEU][hapmap]
rs7637999	0.82[MEX][hapmap];0.89[MKK][hapmap]
rs885592	0.82[MEX][hapmap];0.89[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1011428	chr3:49649989-49706068	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv3812	chr3:49669773-49680587	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49655600-49676200	Weak transcription	HepG2	liver
2	chr3:49657600-49685400	Weak transcription	Brain Substantia Nigra	brain
3	chr3:49660800-49682600	Weak transcription	Liver	Liver
4	chr3:49661600-49692400	Weak transcription	Ovary	ovary
5	chr3:49661800-49682200	Weak transcription	Fetal Brain Male	brain
6	chr3:49662800-49685000	Weak transcription	Right Ventricle	heart
7	chr3:49663800-49679600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:49664200-49683200	Weak transcription	Pancreas	Pancrea
9	chr3:49664600-49674000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:49664600-49680000	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:49665000-49672400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:49665600-49673800	Weak transcription	Brain Angular Gyrus	brain
13	chr3:49667200-49674000	Weak transcription	Brain Anterior Caudate	brain
14	chr3:49667600-49679800	Weak transcription	Brain Germinal Matrix	brain
15	chr3:49668000-49673800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:49669400-49674200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:49669400-49692000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:49669600-49679400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:49669600-49679800	Weak transcription	Fetal Brain Female	brain
20	chr3:49669600-49680000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:49670000-49680000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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