Variant report

Variant	rs183220521
Chromosome Location	chrX:56762477-56762478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UBQLN2-6	chrX:56762139-56762989	NONHSAT137275

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752678	chrX:55930768-56851953	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2753382	chrX:55930768-56851953	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2754448	chrX:55930768-56851953	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2755974	chrX:55930768-56851953	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv432333	chrX:55930768-56851953	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2756104	chrX:56292362-56824154	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	esv2754937	chrX:56482424-56851953	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	esv2758569	chrX:56739069-56887748	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2758867	chrX:56739069-56887748	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv527262	chrX:56758231-56774826	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:56756000-56780000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chrX:56757000-56764600	Weak transcription	Pancreas	Pancrea
3	chrX:56757000-56764800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chrX:56757000-56765000	Weak transcription	Placenta	Placenta
5	chrX:56757000-56766800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chrX:56757200-56764800	Weak transcription	Liver	Liver
7	chrX:56757200-56764800	Weak transcription	Fetal Intestine Small	intestine
8	chrX:56757200-56764800	Weak transcription	Left Ventricle	heart
9	chrX:56757200-56765000	Weak transcription	Brain Angular Gyrus	brain
10	chrX:56757200-56765000	Weak transcription	HSMMtube	muscle
11	chrX:56757200-56766600	Weak transcription	Thymus	Thymus
12	chrX:56757200-56769200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chrX:56757200-56773800	Weak transcription	HSMM	muscle
14	chrX:56757200-56775600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chrX:56757200-56777600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chrX:56757400-56764800	Weak transcription	Brain Substantia Nigra	brain
17	chrX:56757400-56768000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chrX:56757400-56771600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chrX:56757400-56779400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chrX:56757400-56788000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chrX:56757400-56791200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chrX:56757400-56793200	Weak transcription	NH-A	brain
23	chrX:56757400-56793400	Weak transcription	Fetal Intestine Large	intestine
24	chrX:56757600-56762600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chrX:56757600-56763400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chrX:56757600-56764200	Weak transcription	Primary hematopoietic stem cells	blood
27	chrX:56757600-56764600	Weak transcription	HMEC	breast
28	chrX:56757600-56765000	Weak transcription	Brain Cingulate Gyrus	brain
29	chrX:56757600-56766600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chrX:56757600-56767600	Weak transcription	A549	lung
31	chrX:56757600-56767800	Weak transcription	Primary B cells from cord blood	blood
32	chrX:56757600-56779600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chrX:56757600-56800000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chrX:56757800-56764600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chrX:56757800-56764800	Weak transcription	NHEK	skin
36	chrX:56757800-56765000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chrX:56757800-56767200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chrX:56757800-56788200	Weak transcription	Fetal Thymus	thymus
39	chrX:56758000-56773200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chrX:56758200-56762600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chrX:56758400-56763800	Weak transcription	Brain Hippocampus Middle	brain
42	chrX:56758400-56764600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chrX:56758400-56771200	Weak transcription	HUVEC	blood vessel
44	chrX:56758400-56780400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chrX:56758400-56796200	Weak transcription	Brain Germinal Matrix	brain
46	chrX:56758600-56768200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chrX:56758600-56768400	Weak transcription	GM12878-XiMat	blood
48	chrX:56759400-56764600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chrX:56759400-56764800	Weak transcription	Primary T cells from cord blood	blood
50	chrX:56759800-56765400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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