Variant report

Variant	rs1835850
Chromosome Location	chr8:130356425-130356426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130352379..130354785-chr8:130355746..130357679,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYC-3	chr8:130356255-130356605	NONHSAT129111
2	lnc-MYC-3	chr8:130355732-130356701	NONHSAT129113

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10505535	0.85[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10505536	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12056871	0.84[ASN][1000 genomes]
rs13258902	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13280005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1835849	0.86[ASN][1000 genomes]
rs2099290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099291	0.88[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2099292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436206	0.84[ASN][1000 genomes]
rs2568441	0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2568442	0.91[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs2568444	0.86[ASN][1000 genomes]
rs2568446	0.88[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2568448	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2568449	0.88[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2568451	0.86[ASN][1000 genomes]
rs2568452	0.85[ASN][1000 genomes]
rs2579854	0.86[ASN][1000 genomes]
rs2579855	0.95[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2579859	0.91[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2719190	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs2719192	0.88[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2719193	0.95[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs4733546	0.83[ASN][1000 genomes]
rs7003796	0.84[ASN][1000 genomes]
rs7004036	0.84[ASN][1000 genomes]
rs891837	0.91[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130341200-130363000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:130347400-130357200	Weak transcription	Thymus	Thymus
3	chr8:130353400-130361200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr8:130353600-130356800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr8:130353800-130356800	Weak transcription	Dnd41	blood
6	chr8:130354400-130357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:130355000-130368400	Strong transcription	K562	blood
8	chr8:130355600-130357200	Weak transcription	Fetal Thymus	thymus
9	chr8:130356200-130365000	Weak transcription	Ovary	ovary

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