Variant report

Variant	rs2568444
Chromosome Location	chr8:130360792-130360793
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10505536	0.81[ASN][1000 genomes]
rs12056871	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13258902	0.82[ASN][1000 genomes]
rs13280005	0.81[ASN][1000 genomes]
rs1835849	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835850	0.86[ASN][1000 genomes]
rs2099290	0.86[ASN][1000 genomes]
rs2099291	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099292	0.86[ASN][1000 genomes]
rs2436206	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2568441	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2568442	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2568446	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2568448	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2568449	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2568451	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2568452	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2579854	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2579855	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2579859	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2719190	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2719192	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719193	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733546	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7003796	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7004036	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs891837	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130341200-130363000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:130353400-130361200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr8:130355000-130368400	Strong transcription	K562	blood
4	chr8:130356200-130365000	Weak transcription	Ovary	ovary
5	chr8:130357400-130361600	ZNF genes & repeats	Dnd41	blood
6	chr8:130357400-130362200	Weak transcription	Fetal Thymus	thymus
7	chr8:130357400-130363200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:130357800-130364600	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links