Variant report

Variant	rs2568451
Chromosome Location	chr8:130355181-130355182
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYC-15	chr8:130354177-130355531	NONHSAT129112

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12056871	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13258902	0.81[ASN][1000 genomes]
rs1835849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1835850	0.86[ASN][1000 genomes]
rs2099290	0.86[ASN][1000 genomes]
rs2099291	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2099292	0.86[ASN][1000 genomes]
rs2436206	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2568441	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2568442	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2568444	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2568446	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2568448	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2568449	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2568452	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2579854	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2579855	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2579859	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2719190	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2719192	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2719193	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4733546	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7003796	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7004036	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs891837	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130341200-130363000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:130347400-130355200	Weak transcription	Fetal Thymus	thymus
3	chr8:130347400-130357200	Weak transcription	Thymus	Thymus
4	chr8:130353200-130356400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:130353400-130361200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr8:130353600-130356800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:130353800-130356800	Weak transcription	Dnd41	blood
8	chr8:130354400-130357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:130355000-130368400	Strong transcription	K562	blood

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