Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10789707	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890930	0.99[ASN][1000 genomes]
rs10890933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890935	0.84[ASN][1000 genomes]
rs11212863	0.99[ASN][1000 genomes]
rs11212865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212867	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212881	0.93[ASN][1000 genomes]
rs12288850	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12576390	0.83[ASN][1000 genomes]
rs12577297	0.83[ASN][1000 genomes]
rs1509728	0.83[ASN][1000 genomes]
rs2884181	0.85[ASN][1000 genomes]
rs3897724	0.83[ASN][1000 genomes]
rs4258339	0.83[ASN][1000 genomes]
rs7101378	0.99[ASN][1000 genomes]
rs7129123	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72994761	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs949751	0.83[ASN][1000 genomes]
rs9633935	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108899000-108904200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:108901000-108904000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:108901000-108908800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:108901800-108904800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:108902000-108904400	Weak transcription	HMEC	breast
6	chr11:108902000-108904600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:108902200-108904600	Weak transcription	NHEK	skin
8	chr11:108902600-108905800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:108903400-108904600	Enhancers	NH-A	brain
10	chr11:108903600-108904600	Weak transcription	HUVEC	blood vessel
11	chr11:108903800-108904800	Enhancers	Osteobl	bone

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