Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10789707	0.89[ASN][1000 genomes]
rs10890930	0.92[ASN][1000 genomes]
rs10890933	0.93[ASN][1000 genomes]
rs10890935	0.82[ASN][1000 genomes]
rs11212863	0.92[ASN][1000 genomes]
rs11212865	0.93[ASN][1000 genomes]
rs11212867	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11212881	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288850	0.89[ASN][1000 genomes]
rs12576390	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs12577297	0.97[CHD][hapmap];0.83[ASN][1000 genomes]
rs1509728	0.82[CHB][hapmap];0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs1848755	0.93[ASN][1000 genomes]
rs2884181	0.81[ASN][1000 genomes]
rs3897724	0.82[CHB][hapmap];0.97[CHD][hapmap];0.83[ASN][1000 genomes]
rs4258339	0.90[ASW][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.85[MKK][hapmap];0.83[ASN][1000 genomes]
rs7101378	0.92[ASN][1000 genomes]
rs7129123	0.88[ASN][1000 genomes]
rs72994761	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs949751	0.82[CHB][hapmap];0.97[CHD][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9633935	KDELC2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108915600-108922000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:108917200-108918000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr11:108917200-108918400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:108917200-108919400	Enhancers	Osteobl	bone
5	chr11:108917400-108918000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr11:108917400-108919800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:108917800-108919800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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