Variant report

Variant	rs72994761
Chromosome Location	chr11:108907625-108907626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10789707	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890930	0.98[ASN][1000 genomes]
rs10890933	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10890935	0.85[ASN][1000 genomes]
rs11212863	0.98[ASN][1000 genomes]
rs11212865	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212867	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11212881	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12288850	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12576390	0.83[ASN][1000 genomes]
rs12577297	0.83[ASN][1000 genomes]
rs1509728	0.83[ASN][1000 genomes]
rs1848755	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2884181	0.86[ASN][1000 genomes]
rs3897724	0.83[ASN][1000 genomes]
rs4258339	0.83[ASN][1000 genomes]
rs7101378	0.98[ASN][1000 genomes]
rs7129123	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs949751	0.83[ASN][1000 genomes]
rs9633935	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108901000-108908800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:108905400-108908600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:108905400-108908800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:108905400-108908800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:108905400-108909200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:108905400-108909400	Weak transcription	NHDF-Ad	bronchial
7	chr11:108905600-108908600	Weak transcription	HMEC	breast
8	chr11:108905600-108908800	Weak transcription	HSMM	muscle
9	chr11:108905600-108909000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:108906000-108908600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:108906000-108908600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:108906400-108908400	Weak transcription	HUVEC	blood vessel
13	chr11:108907000-108908400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:108907000-108911000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:108907200-108907800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:108907400-108908600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:108907400-108909000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:108907400-108917400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:108907600-108907800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:108907600-108908000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:108907600-108908000	Weak transcription	Osteobl	bone
22	chr11:108907600-108908200	Weak transcription	NHEK	skin
23	chr11:108907600-108908600	Weak transcription	NH-A	brain
24	chr11:108907600-108917200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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